Network proteins of angiotensin-converting enzyme 2 but not angiotensin-converting enzyme 2 itself are host cell receptors for SARS-Coronavirus-2 attachment

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dc.contributor.authorKumar, Arun H.S.-
dc.date.accessioned2020-06-23T12:16:36Z-
dc.date.available2020-06-23T12:16:36Z-
dc.date.issued2020-05-07-
dc.identifier.urihttp://hdl.handle.net/10197/11397-
dc.description.abstractBackground: Coronaviruses causing severe acute respiratory syndrome (SARS-CoV) are known to enter the host cells by attaching to the membrane bound angiotensin-converting enzyme 2 (ACE2). Using molecular docking the efficiency of interaction between SARS-CoV-2 surface proteins and ACE2 network proteins was assessed.Materials and Methods: The ACE2 protein network was identified using the STRING database. The reported SARS-CoV-2 target proteins were searched in the protein data bank and uniport database. The protein-protein interactions were assessed by molecular docking using the Chimera software. The PubChem database was searched for known inhibitors of host cell receptors interacting with SARS-CoV-2 surface proteins. Molecular docking was performed to evaluate the binding efficacy of these compounds against the SARS-CoV-2 targets using AutoDock Vina and the docked protein-ligand complex were visualised using the Chimera and PyMOL software.Results: A low binding affinity was observed between SARS-CoV-2 spike proteins (protein S, M and 6YLA) and ACE2. Coronaviruses are also reported to bind to dipeptidyl peptidase 4 (DPP4), which is a network protein of ACE2. Network analysis showed five membrane proteins associated with ACE2. The ACE2 network proteins were assessed for their binding affinity with all known SARS-CoV-2 surface proteins. The SARS-CoV-2 surface proteins showed preferential binding to network proteins such as DPP4 and Meprin A alpha but not ACE2. The binding efficacy (affinity (-5.86 to -7.10 Kcal/mol), Ki (6.32 – 22.04 mM) and IC50 (12.63 – 113.71 mM) values) of DPP4 inhibitors (saxagliptin and sitagliptin) against SARS-CoV-2 surface proteins, was observed to be at a therapeutically feasible concentration to prevent SARS-CoV-2 attachment and entry into host cells.Conclusion: SARS-CoV-2 surface proteins has better interactions with DPP4 and Meprin A alpha host cells receptors rather than ACE2. DPP4 inhibitors (saxagliptin and sitagliptin) by binding with SARS-CoV-2 surface proteins may be helpful in preventing the virus entry into the host cells.en_US
dc.description.sponsorshipUniversity College Dublinen_US
dc.language.isoenen_US
dc.publisherResearch Squareen_US
dc.rightsThis work is licensed under a Creative Commons Attribution 4.0 International License.en_US
dc.subjectHost cell receptorsen_US
dc.subjectDPP4en_US
dc.subjectAntiviral agentsen_US
dc.subjectSARS-CoV-2en_US
dc.subjectCovid-19en_US
dc.subjectCoronavirusen_US
dc.titleNetwork proteins of angiotensin-converting enzyme 2 but not angiotensin-converting enzyme 2 itself are host cell receptors for SARS-Coronavirus-2 attachmenten_US
dc.typeTechnical Reporten_US
dc.internal.authorcontactotherarun.kumar@ucd.ieen_US
dc.statusNot peer revieweden_US
dc.identifier.doi10.21203/rs.3.rs-27149/v1-
dc.neeo.contributorKumar|Arun H.S.|aut|-
dc.description.othersponsorshipRoyal Society-UKen_US
dc.description.othersponsorshipStemcologyen_US
dc.date.updated2020-05-13T20:00:33Z-
item.grantfulltextopen-
item.fulltextWith Fulltext-
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