A global ocean atlas of eukaryotic genes

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Title: A global ocean atlas of eukaryotic genes
Authors: Carradec, QuentinPelletier, EricDa Silva, CorinneReynaud, Emmanuel G.et al.
Permanent link: http://hdl.handle.net/10197/11794
Date: 25-Jan-2018
Online since: 2020-12-08T14:36:01Z
Abstract: While our knowledge about the roles of microbes and viruses in the ocean has increased tremendously due to recent advances in genomics and metagenomics, research on marine microbial eukaryotes and zooplankton has benefited much less from these new technologies because of their larger genomes, their enormous diversity, and largely unexplored physiologies. Here, we use a metatranscriptomics approach to capture expressed genes in open ocean Tara Oceans stations across four organismal size fractions. The individual sequence reads cluster into 116 million unigenes representing the largest reference collection of eukaryotic transcripts from any single biome. The catalog is used to unveil functions expressed by eukaryotic marine plankton, and to assess their functional biogeography. Almost half of the sequences have no similarity with known proteins, and a great number belong to new gene families with a restricted distribution in the ocean. Overall, the resource provides the foundations for exploring the roles of marine eukaryotes in ocean ecology and biogeochemistry.
Funding Details: European Commission - Seventh Framework Programme (FP7)
European Research Council
Funding Details: GENCI
CNRS
European Molecular Biology Laboratory
Genoscope
French Governement
MEMO LIFE
PSL* Research University
FRANCE GENOMIQUE
Fund for Scientific Research—Flanders
VIB
Stazione Zoologica Anton Dohrn
Institut de France
Harvard University
The Canon Foundation
Veolia Environment Foundation
ANR
Type of material: Journal Article
Publisher: Springer
Journal: Nature Communications
Volume: 9
Copyright (published version): 2018 the Authors
Keywords: Tara Oceans CoordinatorsEukaryotic cellsAnimalsZooplanktonPhytoplanktonBacteriaVirusesEcosystemBiodiversitySeawaterPhylogenyAmino acid sequenceOceans and seasMetagenomeMetagenomicsEukaryotaAquatic organisms
DOI: 10.1038/s41467-017-02342-1
Language: en
Status of Item: Peer reviewed
ISSN: 2041-1723
This item is made available under a Creative Commons License: https://creativecommons.org/licenses/by-nc-nd/3.0/ie/
Appears in Collections:Earth Institute Research Collection
Biomolecular and Biomedical Science Research Collection

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